@article{ cereb2019,
  Author={Scherrer, Benoit and Prohl, Anna K and Taquet, M and Kapur, K and Peters, J M and Tomas-Fernandez, X and Davis, P E and Bebin, Martina and Krueger, D A and Northrup, M D and Wu, J and Sahin, M and Warfield, S K},
  Title={{The connectivity fingerprint of the fusiform gyrus captures the risk of developing autism in infants with Tuberous Sclerosis Complex}},
  Journal={Cerebral Cortex},
  Pages={in press},
  Year={2019}
}
@article{ sr2019,
  Author={Taquet, and Jankovski, A and Rensonnet, G and Jacobs, D and Des Rieux, A and Macq, B and Warfield, S K and Scherrer, Benoit},
  Title={{Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia}},
  Journal={Scientific Report},
  Pages={in press},
  Year={2019}
}
@article{ rensonnet_ni2019,
  Author={Rensonnet, G and Scherrer, Benoit and Girard, G and Jankovski, A and Warfield, SK and Macq, B and Thiran, JP and Taquet, M},
  Title={{Towards microstructure fingerprinting: estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations}},
  Journal={Neuroimage},
  Pages={964-980},
  Volume={1},
  Number={184},
  Year={2019},
  doi={10.1016/j.neuroimage.2018.09.076}
}
@article{ marami_mrm2019,
  Author={Marami, Bahram and Scherrer, Benoit and Khan, Shadab and Afacan, Onur and Prabhu, Sanjay P and Sahin, Mustafa and Warfield, Simon K and Gholipour, Ali},
  Title={{Motion-Robust Diffusion-Compartment Imaging using Simultaneous Multi-Slice Acquisition}},
  Journal={Magn Reson Med},
  Pages={3314-3329},
  Volume={5},
  Number={81},
  Year={2019},
  doi={10.1002/mrm.27613}
}
@article{ Prohl2019,
  Author={Prohl, A and Scherrer, Benoit and Tomas-Fernandez, X and Filip-Dhima, R and Kapur, K and Velasco-Annis, C and Clancy, S and Carmody, E and Dean, M and Valle, M and Prabhu, SP and Peters, JM and Bebin, EM and Krueger, DA and Northrup, H and Wu, JY and Sahin, M and Warfield, SK},
  Title={{Reproducibility of Structural and Diffusion Tensor Imaging in the TACERN Multi-Center Study}},
  Journal={Front Integr Neurosci},
  Pages={13-24},
  Year={2019},
  doi={10.3389/fnint.2019.00024}
}
@article{ srivastava_pedneur2018,
  Author={Srivastava, Siddharth and Scherrer, Benoit and Prohl, Anna K and Filip-Dhima, Rajna and Kapur, Kush and Kolevzon, Alexander and Buxbaum, Joseph and Berry-Kravis, Elizabeth and Soorya, Latha and Thurm, Audrey and Powell, Craig and Bernstein, Jonathan A and Warfield, Simon K and Mustafa, Sahin},
  Title={{Volumetric Analysis of the Basal Ganglia and Cerebellar Structures in Patients with Phelan-McDermid Syndrome}},
  Journal={Pediatr Neurol.},
  Pages={37-43},
  Volume={90},
  Year={2019},
  doi={10.1016/j.pediatrneurol.2018.09.008}
}
@article{ Peters2019,
  Author={Peters, JM and Prohl, A and Kapur, K and Nath, A and Scherrer, Benoit and Clancy, S and Prabhu, SP and Sahin, M and Franz, DN and Warfield, SK and Krueger, DA},
  Title={{Longitudinal Effects of Everolimus on White Matter Diffusion in Tuberous Sclerosis Complex}},
  Journal={Pediatr Neurol},
  Pages={24-30},
  Volume={90},
  Year={2019},
  doi={10.1016/j.pediatrneurol.2018.10.005}
}
@article{ peters2019b,
  Author={Peters, JM and Hyde, DE and Chu, CJ and Boom, M and Scherrer, Benoit and Madsen, JR and Stone, SS and Ouaalam, H and Prabhu, SP and Sahin, M and Warfield, SK},
  Title={{Lesion-Constrained Electrical Source Imaging: A Novel Approach in Epilepsy Surgery for Tuberous Sclerosis Complex.}},
  Journal={J Clin Neurophysiol},
  Pages={in press},
  Year={2019},
  doi={10.1097/WNP.0000000000000615}
}
@article{ rv2019,
  Author={Rojas-Vite, G and Coronado-Leija, R and Narvaez-Delgado, O and Ramírez-Manzanares, A and Marroquín, JL and Noguez-Imm, R and Aranda, ML and Scherrer, Benoit and Larriva-Sahd, J and Concha, L},
  Title={{Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration.}},
  Journal={Neuroimage},
  Pages={in press},
  Year={2019},
  doi={10.1016/j.neuroimage.2019.116013}
}
@article{ nd2019,
  Author={Narvaez-Delgado, Omar and Rojas-Vite, Gilberto and Coronado-Leija, Ricardo and Ramirez-Manzanares, Alonso and Marroquın, José Luis and Noguez-Imm, Ramses and Aranda, Marcos L and Scherrer, Benoit and Larriva-Sahd, Jorge and Concha, Luis},
  Title={{Histological and diffusion-weighted magnetic resonance imaging data from normal and degenerated optic nerve and chiasm of the rat}},
  Journal={Data in Brief},
  Pages={in press},
  Year={2019},
  doi={10.1016/j.dib.2019.104399}
}
@article{ peters2019c,
  Author={Peters, JM and Struyven, RR and Prohl, AK and Vasung, L and Stajduhar, A and Taquet, M and Bushman, JJ and Lidov, H and Singh, JM and Scherrer, Benoit and Madsen, JR and Prabhu, SP and Sahin, M and Afacan, O and Warfield, SK},
  Title={{White matter mean diffusivity correlates with myelination in tuberous sclerosis complex}},
  Journal={Ann Clin Transl Neurol},
  Pages={1178-1190},
  Volume={7},
  Number={6},
  Year={2019},
  doi={10.1002/acn3.793}
}
@article{ macdougall_pedrad2017,
  Author={MacDougall RD, and Scherrer, Benoit and Don S,},
  Title={{Development of a tool to aid the radiologic technologist using augmented reality and computer vision.}},
  Journal={Pediatr Radiol.},
  Pages={141-145},
  Volume={48},
  Number={1},
  Year={2018},
  doi={10.1007/s00247-017-3968-9}
}
@article{ rensonnet_mrm2018,
  Author={Rensonnet, Gaetan and Scherrer, Benoit and Warfield, Simon K and Macq, Benoit and Taquet, Maxime},
  Title={{Assessing the validity of the approximation of DW-MRI signals from crossing fascicles by sums of signals from single fascicles}},
  Journal={Magn Reson Med},
  Pages={2332-2345},
  Volume={79},
  Number={4},
  Year={2018},
  doi={10.1002/mrm.26832}
}
@article{ baumer_cerebcortex2017,
  Author={Baumer FM, and Peters JM, and Clancy S, and Prohl AK, and Prabhu SP, and Scherrer, Benoit and Jansen FE, and Braun KPJ, and Sahin M, and Stamm A, and Warfield SK,},
  Title={{Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex}},
  Journal={Cereb Cortex},
  Pages={3665-3672},
  Volume={10},
  Number={28},
  Year={2018},
  doi={10.1093/cercor/bhx247}
}
@article{ eatonrosen_ni2017,
  Author={Eaton-Rosen, Z and Scherrer, Benoit and Melbourne, A and Ourselin, S and Neil, JJ and Warfield, Simon K},
  Title={{Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI}},
  Journal={Neuroimage},
  Pages={65-72},
  Volume={162},
  Year={2017},
  doi={10.1016/j.neuroimage.2017.08.013}
}
@article{ nmr2017,
  Author={Scherrer, Benoit and Ferizi, U and Schneider, T and Alipoor, M and Eufracio, O and Fick, RHJ and Deriche, R and Nilsson, M and Loya-Olivas, AK and Rivera, M and Poot, DHJ and Ramirez-Manzanares, A and Marroquin, JL and Rokem, A and Potter, C and Dougherty, RF and Sakaie, K and Wheeler-Kingshott, C and Warfield, SK and Witzel, T and Wald, LL and Raya, JG and Alexander, DC},
  Title={{Diffusion MRI microstructure models with in vivo human brain Connectom data: results from a multi-group comparison}},
  Journal={NMR in Biomed},
  Volume={9},
  Number={30},
  Year={2017},
  doi={10.1002/nbm.3734}
}
@article{ chamberland_hbm2017,
  Author={Chamberland, Maxime and Scherrer, Benoit and Prabhu, Sanjay P and Madsen, Joseph and Fortin, David and Whittingstall, Kevin and Descoteaux, Maxime and Warfield, Simon K.},
  Title={{Active Delineation of Meyer's Loop Using Oriented Priors Through MAGNEtic Tractography (MAGNET)}},
  Journal={Hum. Brain Map.},
  Pages={509-527},
  Volume={38},
  Number={1},
  Year={2017},
  doi={10.1002/hbm.23399}
}
@article{ hedoin_tmi2017,
  Author={Hedouin, Renaud and Commowick, Olivier and Bannier, Elise and Scherrer, Benoit and Taquet, Maxime and Warfield, Simon K and Barillot, Christian},
  Title={{Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions}},
  Journal={IEEE Trans. Med. Imag.},
  Pages={1106-1115},
  Volume={36},
  Number={5},
  Year={2017},
  doi={10.1109/TMI.2016.2646920}
}
@article{ marami_ni2017,
  Author={Marami, Bahram and Mohseni Salehi, Seyed Sadegh and Afacan, Onur and Scherrer, Benoit and Rollins, Caitlin K and Yang, Edward and Estroff, Judy A and Warfield, Simon K and Gholipour, Ali},
  Title={{Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis}},
  Journal={Neuroimage},
  Pages={475-488},
  Volume={156},
  Year={2017},
  doi={10.1016/j.neuroimage.2017.04.033}
}
@article{ marami_tmi2016,
  Author={Marami, Bahram and Scherrer, Benoit and Afacan, Onur and Erem, Burak and Warfield, Simon K. and Gholipour, Ali},
  Title={{Motion-robust diffusion-weighted brain MRI reconstruction through slice-level registration-based motion tracking}},
  Journal={IEEE Trans. Med. Imag.},
  Pages={2258-2269},
  Volume={35},
  Number={10},
  Year={2016},
  doi={10.1109/TMI.2016.2555244}
}
@article{ scherrer_mrm2016,
  Author={Scherrer, Benoit and Schwartzman, Armin and Taquet, Maxime and Sahin, Mustafa and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND)}},
  Journal={Magn Reson Med},
  Pages={963-77},
  Volume={76},
  Number={3},
  Year={2016},
  doi={10.1002/mrm.25912}
}
@article{ taquet_media2015,
  Author={Taquet, Maxime and Scherrer, Benoit and Boumal, Nicolas and Peters, Jurriaan M. and Macq, Benoit and Warfield, Simon K.},
  Title={{Improved Fidelity of Brain Microstructure Mapping from Single-Shell Diffusion MRI}},
  Journal={Med Imag Analysis},
  Pages={268-286},
  Volume={26},
  Number={1},
  Year={2015},
  doi={10.1016/j.media.2015.10.004}
}
@article{ gholipour_medphys2015,
  Author={Gholipour, Ali and Afacan, Onur and Aganj, Iman and Scherrer, Benoit and Prabhu, Sanjay P and Sahin, Mustafa and Warfield, Simon K.},
  Title={{Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI}},
  Journal={Medical Physics},
  Volume={42},
  Number={12},
  Year={2015},
  doi={10.1118/1.4935149}
}
@article{ peters_neurology2015,
  Author={Peters, Jurrriaan M. and Prohl, Anna K. and Tomas-Fernandez, Xavier and Taquet, Maxime and Scherrer, Benoit and Prabhu, Sanjay P. and Lidov, Hart G and Singh, Jolene M and Jansen, Floor E and Braun, Kees PJ and Sahin, Mustafa and Warfield, Simon K. and Stamm, Aymeric},
  Title={{Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging}},
  Journal={Neurology},
  Pages={1536-45},
  Volume={85},
  Number={18},
  Year={2015},
  doi={10.1212/WNL.0000000000002055}
}
@article{ taquet_tmi2014,
  Author={Taquet, Maxime and Scherrer, Benoit and Commowick, Olivier and Peters, Jurrriaan M. and Sahin, Mustafa and Macq, Benoit and Warfield, Simon K.},
  Title={{A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure}},
  Journal={IEEE Trans Med Imaging},
  Pages={504-17},
  Volume={2},
  Number={33},
  Year={2014},
  doi={10.1109/TMI.2013.2289381}
}
@article{ peterstaquet_futureneuro2013,
  Author={Peters, Jurrriaan M. and Taquet, Maxime and Prohl, Anna K. and Scherrer, Benoit and Van Eeghen, Agnies M. and Prabhu, Sanjay P. and Sahin, Mustafa and Warfield, Simon K.},
  Title={{Diffusion Tensor Imaging and Related Techniques in Tuberous Sclerosis Complex: Review and Future Directions}},
  Journal={Future Neurology},
  Pages={583-597},
  Volume={8},
  Number={5},
  Year={2013},
  doi={10.2217/fnl.13.37}
}
@article{ hammond_tmi2013,
  Author={Hammond, David and Scherrer, Benoit and Warfield, Simon K.},
  Title={{Cortical graph smoothing : a novel method for exploiting DWI-derived anatomical brain connectivity to improve EEG source estimation}},
  Journal={IEEE Trans Med Imaging},
  Pages={1952-1963},
  Volume={32},
  Number={10},
  Year={2013},
  doi={10.1109/TMI.2013.2271486}
}
@article{ lewis_ccortex2013,
  Author={Lewis, William W. and Sahin, Mustafa and Scherrer, Benoit and Peters, Jurriaan M. and Suarez, Ralph O. and Vogel-Farley, Vanessa K. and Jeste, Shafali S. and Gregas, Matthew C. and Prabhu, Sanjay P. and Nelson, Charles A. and Warfield, Simon K.},
  Title={{Impaired Language Pathways in Tuberous Sclerosis Complex Patients with Autism Spectrum Disorders}},
  Journal={Cereb Cortex},
  Pages={1526-1532},
  Volume={23},
  Number={7},
  Year={2013},
  doi={10.1093/cercor/bhs135}
}
@article{ bscherrer_plosone2012,
  Author={Scherrer, Benoit and Warfield, Simon K.},
  Title={{Parametric Representation of Multiple White Matter Fascicles from Cube and Sphere Diffusion MRI}},
  Journal={PLoS ONE},
  Volume={7},
  Number={11},
  Year={2012},
  doi={10.1371/journal.pone.0048232}
}
@article{ bscherrer_media2012,
  Author={Scherrer, Benoit and Gholipour, Ali and Warfield, Simon K.},
  Title={{Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions}},
  Journal={Med Imag Analysis},
  Pages={1465-1476},
  Volume={16},
  Number={7},
  Year={2012},
  doi={10.1016/j.media.2012.05.003}
}
@article{ peters_acadrad2012,
  Author={Peters, Jurriaan M. and Sahin, Mustafa and Vogel-Farley, V. K. and Jeste, S. S. and Nelson, C. A. and Gregas, M. C. and Prabhu, Sanjay P. and Scherrer, Benoit and Warfield, Simon K.},
  Title={{Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex}},
  Journal={Acad Radiol},
  Pages={17-25},
  Volume={19},
  Number={1},
  Year={2012},
  doi={10.1016/j.acra.2011.08.016}
}
@article{ forbes_jsfs2011,
  Author={Forbes, Florence and Scherrer, Benoit and Dojat, Michel},
  Title={{Bayesian Markov model for cooperative clustering: application to robust MRI brain scan segmentation}},
  Journal={Journal de la Société Française de Statistique},
  Volume={152},
  Number={3},
  Year={2011}
}
@article{ bscherrer_tmi09,
  Author={Scherrer, Benoit and Forbes, Florence and Garbay, Catherine and Dojat, Michel},
  Title={{Distributed Local MRF Models for Tissue and Structure Brain Segmentation}},
  Journal={IEEE Transactions on Medical Imaging},
  Pages={1278-1295},
  Volume={28},
  Number={8},
  Year={2009},
  doi={10.1109/TMI.2009.2014459}
}
@article{ bscherrer_aim09,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{Agentification of Markov model-based segmentation: Application to magnetic resonance brain scans}},
  Journal={Artificial Intelligence in Medicine (AIM)},
  Pages={81-95},
  Volume={46},
  Number={1},
  Year={2009},
  doi={10.1016/j.artmed.2008.08.012}
}


@inbook{ taquet_2015,
  Author={Taquet, Maxime and Scherrer, Benoit and Warfield, Simon K},
  Title={{A Framework for the Analysis of Diffusion Compartment Imaging (DCI)}},
  Booktitle={In Visualization and Processing of Higher Order Descriptors for Multi-Valued Data},
  Pages={217-297},
  Year={2015},
  doi={10.1007/978-3-319-15090-1_14}}
@inbook{ bscherrer_cih2010,
  Author={Scherrer, Benoit and Forbes, Florence and Garbay, Catherine and Dojat, Michel},
  Title={{A joint Bayesian framework for MR brain scan tissue and structure segmentation based on distributed Markovian agents}},
  Booktitle={In I. Bichindaritz and eds. L. Jain editors, Computational Intelligence in Healtcare},
  Volume={309},
  Pages={81-101},
  Year={2010},
  doi={10.1007/978-3-642-14464-6_5}}


@inproceedings{ scherrer_ipmi2017,
  Author={Scherrer, Benoit and Taquet, Maxime and Schwartzman, Armin and St-Onge, Etienne and Rensonnet, Gaetan and Prabhu, Sanjay P and Warfield, Simon K},
  Title={{Decoupling axial and radial tissue heterogeneity in diffusion compartment imaging}},
  Booktitle={Proc. of the 25th Int Conf Inf Process Med Imaging (IPMI)},
  Pages={440-452},
  Volume={LNCS 10265},
  Location={Boone, USA},
  Year={2017},
  doi={10.1007/978-3-319-59050-9_35}
}
@inproceedings{ marami_miccai2016,
  Author={Marami, Bahram and Scherrer, Benoit and Afacan, Onur and Warfield, Simon K and Gholipour, Ali},
  Title={{Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects.}},
  Booktitle={Proc. of the 19th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={544-552},
  Number={9902},
  Location={Athens, Greece},
  Year={2016},
  doi={10.1007/978-3-319-46726-9_63}
}
@inproceedings{ bscherrer_ipmi2015,
  Author={Scherrer, Benoit and Afacan, Onur and Taquet, Maxime and Prabhu, Sanjay P and Gholipour, Ali and Warfield, Simon K.},
  Title={{Accelerated High Spatial Resolution Diffusion-Weighted Imaging}},
  Booktitle={Proc. of the 24th Int Conf Inf Process Med Imaging (IPMI)},
  Pages={69-81},
  Volume={LNCS 9123},
  Location={Isle of Skye, Scotland, UK},
  Year={2015},
  doi={10.1007/978-3-319-19992-4_6}
}
@inproceedings{ scherrer_spie2015,
  Author={Scherrer, Benoit and Afacan, Onur and Stamm, Aymeric and Singh, Jolene and Warfield, Simon K},
  Title={{Optimized magnetic resonance diffusion protocol for ex-vivo whole human brain imaging with a clinical scanner.}},
  Booktitle={Proc. SPIE Medical Imaging},
  Location={Orlando, USA},
  Year={2015},
  doi={10.1117/12.2082387}
}
@inproceedings{ taquet_miccai2014,
  Author={Taquet, Maxime and Scherrer, Benoit and Peters, Jurriaan M. and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure.}},
  Booktitle={Proc. of the 17th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={25-32},
  Number={8673},
  Location={Boston, USA},
  Year={2014},
  doi={10.1007/978-3-319-10404-1_4}
}
@inproceedings{ scherrer_miccai2013,
  Author={Scherrer, Benoit and Schwartzman, Armin and Taquet, Maxime and Prabhu, Sanjay P. and Sahin, Mustafa and Akhondi-Asl, Alireza and Warfield, Simon K},
  Title={{Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-weighted imaging (DIAMOND).}},
  Booktitle={Proc. of the 16th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={518-526},
  Number={8151},
  Location={Nagoya, Japan},
  Year={2013},
  doi={10.1007/978-3-642-40760-4_65}
}
@inproceedings{ taquet_miccai2013,
  Author={Taquet, Maxime and Scherrer, Benoit and Boumal, Nicolas and Macq, Benoit and Warfield, Simon K},
  Title={{Estimation of a Multi-Fascicle Model from Single B-Value Data with a Population-Informed Prior.}},
  Booktitle={Proc. of the 16th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={695-702},
  Volume={8149},
  Location={Nagoya, Japan},
  Year={2013},
  doi={10.1007/978-3-642-40811-3_87}
}
@inproceedings{ bscherrer_ipmi2013,
  Author={Scherrer, Benoit and Taquet, Maxime and Warfield, Simon K.},
  Title={{Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error}},
  Booktitle={Proc. of the 23rd Int Conf Inf Process Med Imaging (IPMI)},
  Pages={742--753},
  Volume={LNCS 7917},
  Location={Asilomar, USA},
  Year={2013},
  doi={10.1007/978-3-642-38868-2_62}
}
@inproceedings{ bscherrer_isbi2013,
  Author={Scherrer, Benoit and Suarez, Ralph O. and Warfield, Simon K.},
  Title={{Automatic delineation of white matter fascicles by localization based upon anatomical spatial relationships}},
  Booktitle={Proc. of the 10th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Location={San Francisco, USA},
  Year={2013}
}
@inproceedings{ scherrer_mmbia2012,
  Author={Scherrer, Benoit and Gholipour, Ali and Warfield, Simon K},
  Title={{Super-Resolution Reconstruction of Diffusion-Weighted Images from Distortion Compensated Orthogonal Anisotropic Acquisitions}},
  Booktitle={Proc. of the 12th IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA)},
  Pages={249-256},
  Location={Breckenridge, USA},
  Year={2012},
  doi={10.1109/MMBIA.2012.6164759}
}
@inproceedings{ bscherrer_isbi2012,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Retrospective local artefact detection in diffusion-weighted images using the random sample consensus (RANSAC) paradigm}},
  Booktitle={Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={546-549},
  Location={Barcelona, Spain},
  Year={2012},
  doi={10.1109/ISBI.2012.6235606}
}
@inproceedings{ taquet_miccai2012,
  Author={Taquet, Maxime and Scherrer, Benoit and Commowick, Olivier and Peters, Jurriaan and Sahin, Mustafa and Macq, Benoit and Warfield, Simon K},
  Title={{Registration and analysis of white matter group differences with a multi-fiber model}},
  Booktitle={Proc. of the 15th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={313-320},
  Volume={15},
  Number={3},
  Location={Nice, France},
  Year={2012},
  doi={10.1007/978-3-642-33454-2_39}
}
@inproceedings{ taquet_isbi2012,
  Author={Taquet, Maxime and Scherrer, Benoit and Benjamin, Christopher and Prabhu, Sanjay and Macq, Benoit and Warfield, Simon K.},
  Title={{Interpolating multi-fiber models by Gaussian mixture simplification}},
  Booktitle={Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={928-931},
  Location={Barcelona, Spain},
  Year={2012},
  doi={10.1109/ISBI.2012.6235708}
}
@inproceedings{ akhondiasl_isbi2012,
  Author={Akhondi-Asl, Alireza and Hans, Arne and Scherrer, Benoit and Peters, Jurriaan M. and Warfield, Simon K.},
  Title={{Whole brain group network analysis using network bias and variance parameters}},
  Booktitle={Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={1511-1514},
  Location={Barcelona, Spain},
  Year={2012},
  doi={10.1109/ISBI.2012.6235859}
}
@inproceedings{ hammond_icasp2012,
  Author={Hammond, David K. and Scherrer, Benoit and Malony, A},
  Title={{Incorporating anatomical connectivity into EEG source estimation via sparse approximation with cortical graph wavelets}},
  Booktitle={Proc. of the 37th IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)},
  Pages={573-576},
  Location={Kyoto, Japan},
  Year={2012},
  doi={10.1109/ICASSP.2012.6287944}
}
@inproceedings{ scherrer_miccai2011,
  Author={Scherrer, Benoit and Gholipour, Ali and Warfield, Simon K},
  Title={{Super-Resolution in Diffusion-Weighted Imaging}},
  Booktitle={Proc. of the 14th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={124-132},
  Volume={14},
  Number={2},
  Location={Toronto, Canada},
  Year={2011},
  doi={10.1007/978-3-642-23629-7_16}
}
@inproceedings{ bscherrer_isbi2011,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Toward an accurate multi-fiber assessment strategy for clinical practice}},
  Booktitle={Proc. of the 8th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={2140-2143},
  Location={Chicago, USA},
  Year={2011},
  doi={10.1109/ISBI.2011.5872836}
}
@inproceedings{ gholipour_embc2011,
  Author={Gholipour, Ali and Kehtarnavaz, Nasser and Scherrer, Benoit and Warfield, Simon K},
  Title={{On the Accuracy of Unwarping Techniques for the Correction of Susceptibility-Induced Geometric Distortion in Magnetic Resonance Echo-Planar Images}},
  Booktitle={Proc. of the 33rd Annual International IEEE EMBS Conference},
  Location={Boston, USA},
  Year={2011},
  doi={10.1109/IEMBS.2011.6091769}
}
@inproceedings{ bscherrer_isbi2010,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Why multiple b-values are required for multi-tensor models. Evaluation with a constrained log-Euclidean model}},
  Booktitle={Proc. of the 7th IEEE International Symposium on Biomedical Imaging (ISBI)},
  Pages={1389-1392},
  Location={Rotterdam, Netherlands},
  Year={2010},
  doi={10.1109/ISBI.2010.5490257}
}
@inproceedings{ bscherrer_miccai09,
  Author={Scherrer, Benoit and Forbes, Florence and Dojat, Michel},
  Title={{A Conditional Random Field Approach for Coupling Local Registration with Robust Tissue and Structure Segmentation}},
  Booktitle={Proc. of the 12th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={540-548},
  Volume={12},
  Number={1},
  Location={London, England},
  Year={2009},
  doi={10.1007/978-3-642-04271-3_66}
}
@inproceedings{ bscherrer_miccai08,
  Author={Scherrer, Benoit and Forbes, Forbes and Garbay, Catherine and Dojat, Michel},
  Title={{Fully Bayesian Joint Model for MR Brain Scan Tissue and Structure Segmentation}},
  Booktitle={Proc. of the 11th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={1066-1074},
  Volume={11},
  Number={2},
  Location={New-York, USA},
  Year={2008},
  doi={10.1007/978-3-540-85990-1_128}
}
@inproceedings{ bscherrer_miccai07,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{LOCUS: LOcal Cooperative Unified Segmentation of MRI Brain Scans}},
  Booktitle={Proc. of the 10th Int Conf Med Image Comput Comput Assist Interv (MICCAI)},
  Pages={219-227},
  Volume={10},
  Number={1},
  Location={Brisbane, Australia},
  Year={2007},
  doi={10.1007/978-3-540-73599-1_2}
}
@inproceedings{ bscherrer_aime07,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{MRF Agent Based Segmentation: Application to MRI Brain Scans}},
  Booktitle={Proc. of the 11th Conference on Artificial Intelligence In Medicine (AIME)},
  Pages={13-23},
  Year={2007},
  doi={10.1007/978-3-540-73599-1_2}
}
@inproceedings{ ky_embc07,
  Author={Kabir, Yacine and Dojat, Michel and Scherrer, Benoit and Forbes, Florence and Garbay, Catherine},
  Title={{Multimodal MRI segmentation of ischemic stroke lesions}},
  Booktitle={Conf Proc IEEE Eng Med Biol Soc., Lyon},
  Year={2007},
  doi={10.1109/IEMBS.2007.4352610}
}
@inproceedings{ bscherrer_jetim06,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{Une Approche SMA pour la Segmentation Markovienne des Tissus et Structures Présents dans les IRM Cérébrales}},
  Year={2006}
}
@inproceedings{ bscherrer_rfia06,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{Segmentation Markovienne Distribuée et Coopérative des Tissus et Structures Présents dans des IRM Cérébrales}},
  Booktitle={RFIA, Tour},
  Year={2006}
}


@inproceedings{ scherrer_ismrm2018a,
  Author={Scherrer, Benoit and Kapur, Kush and Prohl, Anna and Peters, Jurriaan and Tomas-Fernandez, Xavier and Krueger, Darcy and Sahin, Mustafa and Warfield, Simon K},
  Title={{The connectivity fingerprint of the fusiform gyrus predicts the Autism Observation Scale for Infants (AOSI) in Tuberous Sclerosis Complex}},
  Booktitle={Proc. the 26th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Paris, France},
  Year={2018}
}
@inproceedings{ scherrer_ismrm2018a,
  Author={Reymbaut, Alexis and Scherrer, Benoit and Gilbert, Guillaume and Szczepankiewicz, Filip and Nilsson, Markus and Descoteaux, Maxime},
  Title={{The Magic DIAMOND method: probing brain microstructure by combining b-tensor encoding and advanced diffusion compartment imaging}},
  Booktitle={Proc. the 26th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Paris, France},
  Year={2018}
}
@inproceedings{ scherrer_ismrm2018a,
  Author={Rensonnet, Gaëtan and Scherrer, Benoit and Girard, Gabriel and Rafael-Patino, Jonathan and Warfield, Simon K and Macq, Benoit and Thiran, Jean-Philippe and Taquet, Maxime},
  Title={{Estimation of the brain microstructure in the presence of crossing fascicles from a dictionary of Monte Carlo signals}},
  Booktitle={Proc. the 26th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Paris, France},
  Year={2018}
}
@inproceedings{ scherrer_ismrm2018a,
  Author={Mirzaalian, Hengameh and Scherrer, Benoit and Afacan, Onur and Gholipour, Ali and Warfield, Simon K},
  Title={{High Resolution Reconstruction of Diffusion Weighted Imaging Using EPI-Corrected Snapshots Acquired with Rotated K-spaces}},
  Booktitle={Proc. the 26th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Paris, France},
  Year={2018}
}
@inproceedings{ scherrer_ismrm2017a,
  Author={Scherrer, Benoit and Qiu, Jianhua and Hashim, Jumana and Afacan, Onur and Wu, Yaotang and Marcotrigiano, Michael and Warfield, Simon K and Mannix, Rebekah},
  Title={{Diffusion compartment imaging reveals microstructural injuries in a mouse model of mild traumatic brain injury}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ scherrer_ismrm2017b,
  Author={Scherrer, Benoit and Taquet, Maxime and St-Onge, Etienne and Rensonnet, Gaetan and Warfield, Simon K},
  Title={{A novel diffusion compartment imaging (DCI) model that captures the asymmetry of WM microstructure heterogeneity}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ rensonnet_ismrm2017,
  Author={Rensonnet, Gaetan and Scherrer, Benoit and Warfield, Simon K and Macq, Benoit and Taquet, Maxime},
  Title={{Microstructure imaging from a dictionary of Monte Carlo signals: assessment on a rat spinal cord model of Wallerian degeneration}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ afacan_ismrm2017,
  Author={Afacan, Onur and Gholipour, Ali and Scherrer, Benoit and Warfield, Simon K},
  Title={{Evaluation of convex programming for super-resolution MRI reconstruction using shifted slice acquisitions}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ stonge_ismrm2017,
  Author={St-Onge, Etienne and Scherrer, Benoit and Taquet, Maxime and Warfield, Simon K},
  Title={{Multi-Tensor Filtering based on Expectation-Maximization Framework}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ mirzaalian_ismrm2017,
  Author={Mirzaalian, Hengameh and Scherrer, Benoit and Afacan, Onur and Gholipour, Ali and Warfield, Simon K},
  Title={{Performance assessment of EPI-distortion correction of brain images; which plane and phase encoding direction should be chosen?}},
  Booktitle={Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Hawaii, USA},
  Year={2017}
}
@inproceedings{ scherrer_ismrm2016,
  Author={Scherrer, Benoit and Jacobs, Damien and Taquet, Maxime and Des Rieux, Anne and Macq, Benoit and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Measurement of restricted and hindered anisotropic diffusion tissue compartments in a rat model of Wallerian degeneration}},
  Booktitle={Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Singapore},
  Year={2016}
}
@inproceedings{ chamberland_ismrm2016,
  Author={Chamberland, Maxime and Scherrer, Benoit and Prabhu, Sanjay P. and Madsen,Joseph and Fortin,David and Whittingstall,Kevin and Descoteaux, Maxime and Warfield, Simon K},
  Title={{Magnetic ROIs enable improved tractography accuracy through oriented prior}},
  Booktitle={Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Singapore},
  Year={2016}
}
@inproceedings{ scherrer_ismrm2016b,
  Author={Scherrer, Benoit and Majeed, Amara and Afacan, Onur and Singh, Jolene M. and Warfield, Simon K and Sanders, Stephen P.},
  Title={{Right Ventricular Myofiber Architecture}},
  Booktitle={Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Singapore},
  Year={2016}
}
@inproceedings{ scherrer_ismrm_2015highres,
  Author={Scherrer, Benoit and Gholipour, Ali and Afacan, Onur and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Accelerated Motion-Robust Non-Cartesian Multi-Shot Diffusion-Weighted Imaging with Reconstruction in the Image Space}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ fernandez_ismrm_2015,
  Author={Tomas-Fernandez, Xavier and Scherrer, Benoit and Wan, Catherine and Warfield, Simon K},
  Title={{Arcuate Fasciculus Delineation by Means of Diffusion Compartment Imaging Based Tractography}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ jacobs_ismrm_2015a,
  Author={Jacobs, Damien and Scherrer, Benoit and Jankovski, Aleksandar and des Rieux, Anne and Taquet, Maxime and Gallez, Bernard and Warfield, Simon K. and Macq, Benoit},
  Title={{Characterization of the Wallerian Degeneration Process in the Rat Spinal Cord with DIAMOND and NODDI: Comparison with Histological Obervations}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ jacobs_ismrm_2015b,
  Author={Jacobs, Damien and Scherrer, Benoit and Jankovski, Aleksandar and des Rieux, Anne and Taquet, Maxime and Gallez, Bernard and Warfield, Simon K. and Macq, Benoit},
  Title={{Longitudinal Characterization of the Wallerian Degeneration Process by a Multi-Compartment Diffusion Model: DIAMOND After a Rhizotomy in the Rat Spinal Cord and Comparison with the Histology}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ stamm_ismrm_2015,
  Author={Stamm, Aymeric and Afacan, Onur and Scherrer, Benoit and Singh, Jolene M. and Warfield, Simon K.},
  Title={{In-Vivo High Resolution Imaging of Fine-Scale Anatomical Structures at 3T with Simultaneous Bias/Variance Reduction}},
  Booktitle={Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Toronto, Canada},
  Year={2015}
}
@inproceedings{ scherrer_ismrm_2014diamond,
  Author={Scherrer, Benoit and Taquet, Maxime and Sahin, Mustafa and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{A novel biophysical model that characterizes the distribution of anisotropic micro-structural environments with DWI}},
  Booktitle={Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Milan, Italy},
  Year={2014}
}
@inproceedings{ scherrer_ismrm_2014srr,
  Author={Scherrer, Benoit and Gholipour, Ali and Sahin, Mustafa and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Super-resolution multi-fascicle imaging reveals the presence of both radial and tangential diffusion in the mature cortex using a clinical scanner}},
  Booktitle={Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Milan, Italy},
  Year={2014}
}
@inproceedings{ scherrer_ismrm_2014ge,
  Author={Scherrer, Benoit and Taquet, Maxime and Sahin, Mustafa and Prabhu, Sanjay P. and Warfield, Simon K},
  Title={{Quantitative evaluation of biophysical models of the diffusion with in vivo data by assessment of the generalization error}},
  Booktitle={Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Milan, Italy},
  Year={2014}
}
@inproceedings{ scherrer_ismrm_workshop2013,
  Author={Scherrer, Benoit and Schwartzman, Armin and Taquet, Maxime and Prabhu, Sanjay P. and Sahin, Mustafa and Warfield, Simon K},
  Title={{DIAMOND: a novel biophysical diffusion model that characterizes the distribution of anisotropic micro-structural environments with DWI}},
  Booktitle={ISMRM Workshop 'Diffusion as a Probe of Neural Tissue Microstructure'},
  Location={Podstrana, Croatia},
  Year={2013}
}
@inproceedings{ scherrer_ismrm2013a,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Accurate estimation of a multiple fascicle model is enabled by manipulation of gradient strength in a two-shell HARDI to achieve low TE}},
  Booktitle={Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Salt Lake City, USA},
  Year={2013}
}
@inproceedings{ scherrer_ismrm2013b,
  Author={Scherrer, Benoit and Taquet, Maxime and Afacan, Onur and Warfield, Simon K},
  Title={{Does the signal arising from a single fascicle significantly deviates from a monoexponential decay with a clinical scanner?}},
  Booktitle={Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Salt Lake City, USA},
  Year={2013}
}
@inproceedings{ taquet_ismrm2013,
  Author={Taquet, Maxime and Scherrer, Benoit and Macq, Benoit and Warfield, Simon K},
  Title={{Multi-Fascicle Model Reconstruction from Acquisitions of DWI at a Single B-Value with a Population-Informed Prior}},
  Booktitle={Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Salt Lake City, USA},
  Year={2013}
}
@inproceedings{ afacan_ismrm2013,
  Author={Afacan, Onur and Gholipour, Ali and Scherrer, Benoit and Warfield, Simon K},
  Title={{Motion Detection for Diffusion Weighted MRI Using EPI Phase Correction Lines}},
  Booktitle={Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Salt Lake City, USA},
  Year={2013}
}
@inproceedings{ scherrer_ismrm2012a,
  Author={Scherrer, Benoit and Gholipour, Ali and Warfield, Simon K},
  Title={{Increasing the resolution of diffusion-weighted MRI with distortion compensated orthogonal acquisitions and super-resolution reconstruction}},
  Booktitle={Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Melbourne, Australia},
  Year={2012}
}
@inproceedings{ scherrer_ismrm2012b,
  Author={Scherrer, Benoit and Sahin, Mustafa and Stamoulis, Caterina and Prabhu, Sanjay and Akhondi-Asl, Alireza and Warfield, Simon K.},
  Title={{Globally impaired network of anatomical connectivity in tuberous sclerosis complex patients with autism spectrum disorders}},
  Booktitle={Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Melbourne, Australia},
  Year={2012}
}
@inproceedings{ akhondiasl_ismrm2012,
  Author={Akhondi-Asl, Alireza and Hans, Arne and Scherrer, Benoit and Peters, Jurriaan M. and Warfield, Simon K.},
  Title={{Whole brain connectivity analysis using resting state functional MRI in pediatric TSC patients}},
  Booktitle={Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Melbourne, Australia},
  Year={2012}
}
@inproceedings{ bscherrer_ismrm2011,
  Author={Scherrer, Benoit and Warfield, Simon K.},
  Title={{Characterizing Complex White Matter Structure from Cube and Sphere Diffusion Imaging with a Multi-Fiber Model (CUSP-MFM)}},
  Booktitle={Proc. the 19th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Montreal, Canada},
  Year={2011}
}
@inproceedings{ bscherrer_hbm2011,
  Author={Scherrer, Benoit and Warfield, Simon K},
  Title={{Selecting the number of fibers in a Multi-Fiber Model from CUbe and SPhere (CUSP) Diffusion Imaging}},
  Booktitle={Proc. of the Human Brain Mapping Conference (HBM)},
  Location={Quebec, Canada},
  Year={2011}
}
@inproceedings{ hammond_ninf2011,
  Author={Hammond, David and Scherrer, Benoit},
  Title={{EEG Source Estimation via Cortical Graph Smoothing}},
  Booktitle={INCF NeuroInformatics},
  Location={Boston, USA},
  Year={2011}
}
@inproceedings{ bscherrer_ismrm2010,
  Author={Scherrer, Benoit and Warfield, Simon K.},
  Title={{Optimal HARDI acquisition schemes for multi-tensor models}},
  Booktitle={Proc. the 18th International Symposium on Magnetic Resonance in Medicine (ISMRM)},
  Location={Stockholm, Sweden},
  Year={2010}
}
@inproceedings{ bscherrer_hbm06,
  Author={Scherrer, Benoit and Dojat, Michel and Forbes, Florence and Garbay, Catherine},
  Title={{Distributed and Cooperative Markovian Segmentation of Tissues and Structures in MRI Brain Scans}},
  Booktitle={Human Brain Mapping},
  Location={Florence, Italie},
  Year={2006}
}