iCV

interactive CV

Scherrer Benoit
Boston Children's Hospital
300 Longwood Avenue
Department of Radiology, Wolbach 215
Boston MA 02115
USA
Phone : +1 617-355-5726

Email : benoit.scherrer@childrens.harvard.edu

The aim of this iCV is to illustrate my CV dynamically with some screen-shots & more information.

FACULTY ACADEMIC APPOINTMENT

2018-present

Assistant Professor in Radiology, Harvard Medical School

Computational Radiology Laboratory at Boston Children's Hospital

2012-2018

Instructor in Radiology, Harvard Medical School

Computational Radiology Laboratory at Boston Children's Hospital

EDUCATION

2009-2012

Postdoctoral reseach fellow

Computational Radiology Laboratory at Boston Children's Hospital

2005-2008

Ph. D. Thesis in Applied Mathematics and Computer Science.

Institut National Polytechnique de Grenoble (INPG)

Thesis Topic: MR brain scan tissus and structures segmentation: local cooperative Markovian agents and Bayesian formulation.

Advisors: Catherine Garbay, LIG, MAGMA Team

Michel Dojat, INSERM U836, Functional and Metabolic Neuroimaging Team

Active Collaboration: Florence Forbes, INRIA Grenoble, MISTIS Team

[MORE DETAILS]

2004-2005

Master of Science in Image Analysis, Vision and Robotics

ENSIMAG, Grenoble

Distributed Segmentation of MR Brain Scans. Introduction of fuzzy spatial relations in MRF models for subcortical structure segmentation.

2003-2004

Third year of Engineering school, Student Program Exchange

Ecole Polytechnique de Montreal, Canada

2001-2003

Engineering school in Applied Mathematics and Computer Science

ENSEEIHT, Toulouse

1999-2001

Preparatory Classes for French Engineering Schools

Lycée Corneille, Rouen

Maths SUP/Maths SPE: Two years of high level mathematics and physics courses to get in the highly competitive french engineering schools ("Grandes Ecoles").
Major: Mathematics

PROFESSIONAL EXPERIENCE

2005-2008

Teacher Assistant in Applied Mathematics

Polytech' Grenoble

- Numerical Analysis: Function integration, differential equations, optimisation, least square approximation... (using Matlab or Scilab)
- Signal processing
- Microcontroller programming in assembly language.

2007

Member of the AFIA Conference 2007 Organizing Committee

Coordinator of PhD students participation to the organizing committee of the AFIA Conference (French Association for Artificial Intelligence). Grenoble.

2004

Training Period in a Neurostimulation Laboratory (5 months)

Polystim, Montreal [link]

Bladder implant project. Conception of a wireless external controller using on a PALM(c) to send neurostimulation parameters to the implant. Evaluation during real experimentational chirurgical surgery.

[MORE DETAILS]

2002

Computer Science Teaching

Bobo-Dioulasso, Burkina Faso

Six weeks in Burkina Faso to teach computer science & web site creation

AWARDS AND GRANTS

2012

Elsevier/MEDIA Best Paper Award 2012

Scherrer B, Gholipour A, Warfield SK, Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions, Med Imag Analysis, 16(7), 2012, 1465-1476, PMID22770597, PMC3448812, NIHMS388656

Elsevier/MEDIA Best Paper Award 2012 : link, cache
10th MEDIA Hottest Article in 2012 : link, cache

Two Magna Cum Laude Merit Award at ISMRM 2012 (Melbourne, Australia)

Scherrer B, Sahin M, Stamoulis C, Prabhu S, Akhondi-Asl A, Warfield SK, Globally impaired network of anatomical connectivity in tuberous sclerosis complex patients with autism spectrum disorders, Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM), Melbourne, Australia, 2012

ISMRM Magna Cum Laude Merit Award

Scherrer B, Gholipour A, Warfield SK, Increasing the resolution of diffusion-weighted MRI with distortion compensated orthogonal acquisitions and super-resolution reconstruction, Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM), Melbourne, Australia, 2012

ISMRM Magna Cum Laude Merit Award

IEEE ISBI 2012 Best Paper Award and IEEE ISBI Travel Grant at ISBI

Taquet M, Scherrer B, Benjamin C, Prabhu S, Macq B, Warfield SK, Interpolating multi-fiber models by Gaussian mixture simplification, Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, 2012, 928-931

IEEE ISBI 2012 Best Paper Award, IEEE ISBI Travel Grant (EN, Draft version)

2011

Trainee Abstract Award at HBM2011 (Quebec, CA):

Scherrer B, Warfield SK, Selecting the number of fibers in a Multi-Fiber Model from CUbe and SPhere (CUSP) Diffusion Imaging, Proc. of the Human Brain Mapping Conference (HBM), Quebec, Canada, 2011

Trainee Abstract Award
(EN, Draft version)

2009

Applied Mathematics Best PhD Thesis Price

Grenoble INP [link]

2006-2008

Thesis Grant from the French Minister (MENRT Grant)

2008

Student paper award at MICCAI 2008 (New York)

in the category "Segmentation" for the paper Fully Bayesian Joint Model for MR Brain Scan Tissue and Structure Segmentation.

Scherrer B, Forbes F, Garbay C, Dojat M, Fully Bayesian Joint Model for MR Brain Scan Tissue and Structure Segmentation, Proc. of the 11th Int Conf Med Image Comput Comput Assist Interv (MICCAI), 11(2), New-York, USA, 2008, 1066-1074, PMID18982710

Young Investigator MICCAI Award in the category Segmentation
(EN, Draft version)

2007

Company creation contest

- 3rd place of the company creation contest organized by "La Maison de l’Entrepreneuriat"
- Winner of the company creation contest organized during "les DOCTORIALES"

1996,97,98

Final of the national programming contest for people under 21 years old

Three time among the 100 in the final round (First time: younger finalist, 15years old). Best podium: 26th

RESEARCH INTERESTS

Diffusion MRI, Anatomical MRI
Novel MRI acquisitions, Q-space sampling techniques, MRI Physics
Tissue microstructure imaging, biophysical modeling, histological validation
Medical & Neuroscience Applications, Traumatic Brain Injury, Autism Spectrum Disorder

COMMITTEE SERVICE

CDMRI'2015, Workshop on Computational Diffusion MRI (CDMRI)
INTELLMR'2015, Intelligent imaging: Linking MR acquisition and processing
WBIR'2014, 6th International Workshop on Biomedical Image Registration
CDMRI'2014, Workshop on Computational Diffusion MRI (CDMRI)
CDMRI'2013, Workshop on Computational Diffusion MRI (CDMRI)

ORGANIZING COMMITTEE

ISBI'15 White Matter Modeling Challenge
http://cmic.cs.ucl.ac.uk/wmmchallenge/
ISBI'13 Tutorial on Motion-Robust Super-resolution Magnetic Resonance Imaging
http://crl.med.harvard.edu/research/isbi2013_tutorial/
AFIA 2007, French Association for Artificial Intelligence.
PhD students coordinator

ORAL SESSION CONFERENCE CO-CHAIR

ISBI 2012 (Barcelona, SP). Diffusion Imaging session
ISMRM 2011 (Montreal, CA). Advances in Image Analysis session

AD HOC REVIEWER

Neuroimage
Magnetic Resonance in Medicine
Human Brain Mapping
IEEE Transactions on Medical Imaging (IEEE TMI))
Medical Imaging Analysis (MEDIA)
IEEE Transactions on Image Processing (IEEE TIP)
IEEE Transactions on Biomedical Engineering (IEEE TBME)
Medical Imaging Computing and Computer-Assisted Intervention (MICCAI)
IEEE International Symposium on Biomedical Imaging (ISBI)
Physics in Medicine and Biology
PLOS One
Clinical Neurology and Neurosurgery
Journal of Neuroimaging

PUBLICATIONS

Journals

2019

Scherrer B, Prohl AK, Taquet M, Kapur K, Peters JM, Tomas-Fernandez X, Davis PE, Bebin M, Krueger DA, Northrup MD, Wu J, Sahin M, Warfield SK, The connectivity fingerprint of the fusiform gyrus captures the risk of developing autism in infants with Tuberous Sclerosis Complex, Cerebral Cortex, 2019, in press

Taquet , Jankovski A, Rensonnet G, Jacobs D, Des Rieux A, Macq B, Warfield SK, Scherrer B, Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia, Scientific Report, 2019, in press

Rensonnet G, Scherrer B, Girard G, Jankovski A, Warfield S, Macq B, Thiran J, Taquet M, Towards microstructure fingerprinting: estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations, Neuroimage, 1(184), 2019, 964-980, PMID30282007

Marami B, Scherrer B, Khan S, Afacan O, Prabhu SP, Sahin M, Warfield SK, Gholipour A, Motion-Robust Diffusion-Compartment Imaging using Simultaneous Multi-Slice Acquisition, Magn Reson Med, 5(81), 2019, 3314-3329, PMID30443929

Prohl A, Scherrer B, Tomas-Fernandez X, Filip-Dhima R, Kapur K, Velasco-Annis C, Clancy S, Carmody E, Dean M, Valle M, Prabhu S, Peters J, Bebin E, Krueger D, Northrup H, Wu J, Sahin M, Warfield S, Reproducibility of Structural and Diffusion Tensor Imaging in the TACERN Multi-Center Study, Front Integr Neurosci, 2019, 13-24, PMID31417372

Srivastava S, Scherrer B, Prohl AK, Filip-Dhima R, Kapur K, Kolevzon A, Buxbaum J, Berry-Kravis E, Soorya L, Thurm A, Powell C, Bernstein JA, Warfield SK, Mustafa S, Volumetric Analysis of the Basal Ganglia and Cerebellar Structures in Patients with Phelan-McDermid Syndrome, Pediatr Neurol., 90, 2019, 37-43

Peters J, Prohl A, Kapur K, Nath A, Scherrer B, Clancy S, Prabhu S, Sahin M, Franz D, Warfield S, Krueger D, Longitudinal Effects of Everolimus on White Matter Diffusion in Tuberous Sclerosis Complex, Pediatr Neurol, 90, 2019, 24-30, PMID30424962

Peters J, Hyde D, Chu C, Boom M, Scherrer B, Madsen J, Stone S, Ouaalam H, Prabhu S, Sahin M, Warfield S, Lesion-Constrained Electrical Source Imaging: A Novel Approach in Epilepsy Surgery for Tuberous Sclerosis Complex., J Clin Neurophysiol, 2019, in press, PMID31261349

Rojas-Vite G, Coronado-Leija R, Narvaez-Delgado O, RamÃrez-Manzanares A, MarroquÃn J, Noguez-Imm R, Aranda M, Scherrer B, Larriva-Sahd J, Concha L, Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration., Neuroimage, 2019, in press, PMID31326575

Narvaez-Delgado O, Rojas-Vite G, Coronado-Leija R, Ramirez-Manzanares A, MarroquÄ±n JL, Noguez-Imm R, Aranda ML, Scherrer B, Larriva-Sahd J, Concha L, Histological and diffusion-weighted magnetic resonance imaging data from normal and degenerated optic nerve and chiasm of the rat, Data in Brief, 2019, in press

Peters J, Struyven R, Prohl A, Vasung L, Stajduhar A, Taquet M, Bushman J, Lidov H, Singh J, Scherrer B, Madsen J, Prabhu S, Sahin M, Afacan O, Warfield S, White matter mean diffusivity correlates with myelination in tuberous sclerosis complex, Ann Clin Transl Neurol, 7(6), 2019, 1178-1190, PMID31353853

2018

MacDougall RD , Scherrer B, Don S , Development of a tool to aid the radiologic technologist using augmented reality and computer vision., Pediatr Radiol., 48(1), 2018, 141-145, PMID28866805

Rensonnet G, Scherrer B, Warfield SK, Macq B, Taquet M, Assessing the validity of the approximation of DW-MRI signals from crossing fascicles by sums of signals from single fascicles, Magn Reson Med, 79(4), 2018, 2332-2345, PMID28714064

Baumer FM , Peters JM , Clancy S , Prohl AK , Prabhu SP , Scherrer B, Jansen FE , Braun KPJ , Sahin M , Stamm A , Warfield SK , Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex, Cereb Cortex, 10(28), 2018, 3665-3672, PMID29939236, PMC6132277

2017

Eaton-Rosen Z, Scherrer B, Melbourne A, Ourselin S, Neil J, Warfield SK, Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI, Neuroimage, 162, 2017, 65-72, PMID28801253

Scherrer B *, Ferizi U *, Schneider T *, Alipoor M, Eufracio O, Fick R, Deriche R, Nilsson M, Loya-Olivas A, Rivera M, Poot D, Ramirez-Manzanares A, Marroquin J, Rokem A, Potter C, Dougherty R, Sakaie K, Wheeler-Kingshott C, Warfield S, Witzel T, Wald L, Raya J, Alexander D, Diffusion MRI microstructure models with in vivo human brain Connectom data: results from a multi-group comparison, NMR in Biomed, 9(30), 2017, PMID28643354, PMC5563694, NIHMS888819

* Authors contributed equally (co-first authors)

Chamberland M, Scherrer B, Prabhu SP, Madsen J, Fortin D, Whittingstall K, Descoteaux M, Warfield SK, Active Delineation of Meyer's Loop Using Oriented Priors Through MAGNEtic Tractography (MAGNET), Hum. Brain Map., 38(1), 2017, 509-527, PMID27647682, PMC5333642

Hedouin R, Commowick O, Bannier E, Scherrer B, Taquet M, Warfield SK, Barillot C, Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions, IEEE Trans. Med. Imag., 36(5), 2017, 1106-1115, PMID28092527

Marami B, Mohseni Salehi SS, Afacan O, Scherrer B, Rollins CK, Yang E, Estroff JA, Warfield SK, Gholipour A, Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis, Neuroimage, 156, 2017, 475-488, PMID28433624, PMC5548611

2016

Marami B, Scherrer B, Afacan O, Erem B, Warfield SK, Gholipour A, Motion-robust diffusion-weighted brain MRI reconstruction through slice-level registration-based motion tracking, IEEE Trans. Med. Imag., 35(10), 2016, 2258-2269, PMID27834639, PMC5108524, NIHMS823359

Scherrer B, Schwartzman A, Taquet M, Sahin M, Prabhu SP, Warfield SK, Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND), Magn Reson Med, 76(3), 2016, 963-77, PMID26362832, PMC4788987, NIHMS715838

2015

Taquet M, Scherrer B, Boumal N, Peters JM, Macq B, Warfield SK, Improved Fidelity of Brain Microstructure Mapping from Single-Shell Diffusion MRI, Med Imag Analysis, 26(1), 2015, 268-286, PMID26529580, PMC4679640, NIHMS734970

Gholipour A, Afacan O, Aganj I, Scherrer B, Prabhu SP, Sahin M, Warfield SK, Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI, Medical Physics, 42(12), 2015, PMID26632048, PMC4644155

Peters JM, Prohl AK, Tomas-Fernandez X, Taquet M, Scherrer B, Prabhu SP, Lidov HG, Singh JM, Jansen FE, Braun KP, Sahin M, Warfield SK, Stamm A, Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging, Neurology, 85(18), 2015, 1536-45, PMID26432846, PMC4642145

2014

Taquet M, Scherrer B, Commowick O, Peters JM, Sahin M, Macq B, Warfield SK, A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure, IEEE Trans Med Imaging, 2(33), 2014, 504-17, PMID24235301, PMC3984609, NIHMS559791

2013

Peters JM *, Taquet M *, Prohl AK, Scherrer B, Van Eeghen AM, Prabhu SP, Sahin M, Warfield SK, Diffusion Tensor Imaging and Related Techniques in Tuberous Sclerosis Complex: Review and Future Directions, Future Neurology, 8(5), 2013, 583-597, PMID24489482, PMC3904372, NIHMS537965

* Authors contributed equally

Hammond D, Scherrer B, Warfield SK, Cortical graph smoothing : a novel method for exploiting DWI-derived anatomical brain connectivity to improve EEG source estimation, IEEE Trans Med Imaging, 32(10), 2013, 1952-1963, PMID23807436, PMC3901841, NIHMS544162

Lewis WW, Sahin M, Scherrer B, Peters JM, Suarez RO, Vogel-Farley VK, Jeste SS, Gregas MC, Prabhu SP, Nelson CA, Warfield SK, Impaired Language Pathways in Tuberous Sclerosis Complex Patients with Autism Spectrum Disorders, Cereb Cortex, 23(7), 2013, 1526-1532, PMID22661408, PMC3673171

2012

Scherrer B, Warfield SK, Parametric Representation of Multiple White Matter Fascicles from Cube and Sphere Diffusion MRI, PLoS ONE, 7(11), 2012, PMID23189128, PMC3506641

Elsevier/MEDIA Best Paper Award 2012 : link, cache
10th MEDIA Hottest Article in 2012 : link, cache

Peters JM, Sahin M, Vogel-Farley VK, Jeste SS, Nelson CA, Gregas MC, Prabhu SP, Scherrer B, Warfield SK, Loss of white matter microstructural integrity is associated with adverse neurological outcome in tuberous sclerosis complex, Acad Radiol, 19(1), 2012, 17-25, PMID22142677, PMC3343770, NIHMS338007

2011

Forbes F, Scherrer B, Dojat M, Bayesian Markov model for cooperative clustering: application to robust MRI brain scan segmentation, Journal de la SociÃ©tÃ© FranÃ§aise de Statistique, 152(3), 2011

2009

Scherrer B, Forbes F, Garbay C, Dojat M, Distributed Local MRF Models for Tissue and Structure Brain Segmentation, IEEE Transactions on Medical Imaging, 28(8), 2009, 1278-1295, PMID19228553

(EN, Draft version)

Scherrer B, Dojat M, Forbes F, Garbay C, Agentification of Markov model-based segmentation: Application to magnetic resonance brain scans, Artificial Intelligence in Medicine (AIM), 46(1), 2009, 81-95, PMID18929472

Book Chapters

2015

Taquet M, Scherrer B, Warfield SK, A Framework for the Analysis of Diffusion Compartment Imaging (DCI), In Visualization and Processing of Higher Order Descriptors for Multi-Valued Data, 2015, 217-297

(EN, Draft version)

2010

Scherrer B, Forbes F, Garbay C, Dojat M, A joint Bayesian framework for MR brain scan tissue and structure segmentation based on distributed Markovian agents, In I. Bichindaritz and eds. L. Jain editors, Computational Intelligence in Healtcare, 309, 2010, 81-101

(EN, Draft version)

Peer-Reviewed Conference Papers

2017

Scherrer B, Taquet M, Schwartzman A, St-Onge E, Rensonnet G, Prabhu SP, Warfield SK, Decoupling axial and radial tissue heterogeneity in diffusion compartment imaging, Proc. of the 25th Int Conf Inf Process Med Imaging (IPMI), LNCS 10265, Boone, USA, 2017, 440-452

2016

Marami B, Scherrer B, Afacan O, Warfield SK, Gholipour A, Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects., Proc. of the 19th Int Conf Med Image Comput Comput Assist Interv (MICCAI)(9902), Athens, Greece, 2016, 544-552, PMID28127590, PMC5257341

2015

Scherrer B, Afacan O, Taquet M, Prabhu SP, Gholipour A, Warfield SK, Accelerated High Spatial Resolution Diffusion-Weighted Imaging, Proc. of the 24th Int Conf Inf Process Med Imaging (IPMI), LNCS 9123, Isle of Skye, Scotland, UK, 2015, 69-81, PMID26167096, PMC4495974

Scherrer B, Afacan O, Stamm A, Singh J, Warfield SK, Optimized magnetic resonance diffusion protocol for ex-vivo whole human brain imaging with a clinical scanner., Proc. SPIE Medical Imaging, Orlando, USA, 2015

2014

Taquet M, Scherrer B, Peters JM, Prabhu SP, Warfield SK, A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure., Proc. of the 17th Int Conf Med Image Comput Comput Assist Interv (MICCAI)(8673), Boston, USA, 2014, 25-32, PMID25333097, PMC4209905, NIHMS631611

MICCAI Young Investigator Award for Maxime Taquet, first author

2013

Scherrer B, Schwartzman A, Taquet M, Prabhu SP, Sahin M, Akhondi-Asl A, Warfield SK, Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-weighted imaging (DIAMOND)., Proc. of the 16th Int Conf Med Image Comput Comput Assist Interv (MICCAI)(8151), Nagoya, Japan, 2013, 518-526, PMID24505801, PMC4029840, NIHMS565120

Taquet M, Scherrer B, Boumal N, Macq B, Warfield SK, Estimation of a Multi-Fascicle Model from Single B-Value Data with a Population-Informed Prior., Proc. of the 16th Int Conf Med Image Comput Comput Assist Interv (MICCAI), 8149, Nagoya, Japan, 2013, 695-702, PMID24505728, PMC4029842, NIHMS565123

MICCAI Student Travel Award for Maxime Taquet, first author

Scherrer B *, Taquet M *, Warfield SK, Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error, Proc. of the 23rd Int Conf Inf Process Med Imaging (IPMI), LNCS 7917, Asilomar, USA, 2013, 742--753, PMID24684014, PMC4138217, NIHMS607786

* Authors contributed equally

Scherrer B, Suarez RO, Warfield SK, Automatic delineation of white matter fascicles by localization based upon anatomical spatial relationships, Proc. of the 10th IEEE International Symposium on Biomedical Imaging (ISBI), San Francisco, USA, 2013

2012

Scherrer B, Gholipour A, Warfield SK, Super-Resolution Reconstruction of Diffusion-Weighted Images from Distortion Compensated Orthogonal Anisotropic Acquisitions, Proc. of the 12th IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA), Breckenridge, USA, 2012, 249-256

Scherrer B, Warfield SK, Retrospective local artefact detection in diffusion-weighted images using the random sample consensus (RANSAC) paradigm, Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, 2012, 546-549

(EN, Draft version)

Taquet M, Scherrer B, Commowick O, Peters J, Sahin M, Macq B, Warfield SK, Registration and analysis of white matter group differences with a multi-fiber model, Proc. of the 15th Int Conf Med Image Comput Comput Assist Interv (MICCAI), 15(3), Nice, France, 2012, 313-320, PMID23286145, PMC3671390, NIHMS477178

IEEE ISBI 2012 Best Paper Award, IEEE ISBI Travel Grant (EN, Draft version)

Akhondi-Asl A, Hans A, Scherrer B, Peters JM, Warfield SK, Whole brain group network analysis using network bias and variance parameters, Proc. of the 9th IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, 2012, 1511-1514

(EN, Draft version)

Hammond DK, Scherrer B, Malony A, Incorporating anatomical connectivity into EEG source estimation via sparse approximation with cortical graph wavelets, Proc. of the 37th IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Kyoto, Japan, 2012, 573-576

(EN, Draft version)

2011

Scherrer B, Gholipour A, Warfield SK, Super-Resolution in Diffusion-Weighted Imaging, Proc. of the 14th Int Conf Med Image Comput Comput Assist Interv (MICCAI), 14(2), Toronto, Canada, 2011, 124-132, PMID21995021, PMC3687082, NIHMS475056

Scherrer B, Warfield SK, Toward an accurate multi-fiber assessment strategy for clinical practice, Proc. of the 8th IEEE International Symposium on Biomedical Imaging (ISBI), Chicago, USA, 2011, 2140-2143

(EN, Draft version)

Gholipour A, Kehtarnavaz N, Scherrer B, Warfield SK, On the Accuracy of Unwarping Techniques for the Correction of Susceptibility-Induced Geometric Distortion in Magnetic Resonance Echo-Planar Images, Proc. of the 33rd Annual International IEEE EMBS Conference, Boston, USA, 2011, PMID22255949, PMC3675776, NIHMS478435

2010

Scherrer B, Warfield SK, Why multiple b-values are required for multi-tensor models. Evaluation with a constrained log-Euclidean model, Proc. of the 7th IEEE International Symposium on Biomedical Imaging (ISBI), Rotterdam, Netherlands, 2010, 1389-1392

(EN, Draft version)

2009

Scherrer B, Forbes F, Dojat M, A Conditional Random Field Approach for Coupling Local Registration with Robust Tissue and Structure Segmentation, Proc. of the 12th Int Conf Med Image Comput Comput Assist Interv (MICCAI), 12(1), London, England, 2009, 540-548, PMID20426154

(EN, Draft version)

2008

Young Investigator MICCAI Award in the category Segmentation
(EN, Draft version)

2007

Scherrer B, Dojat M, Forbes F, Garbay C, LOCUS: LOcal Cooperative Unified Segmentation of MRI Brain Scans, Proc. of the 10th Int Conf Med Image Comput Comput Assist Interv (MICCAI), 10(1), Brisbane, Australia, 2007, 219-227, PMID18051062, PMC2735243

(EN, Draft version)

Scherrer B, Dojat M, Forbes F, Garbay C, MRF Agent Based Segmentation: Application to MRI Brain Scans, Proc. of the 11th Conference on Artificial Intelligence In Medicine (AIME), 2007, 13-23

(EN, Draft version)

Kabir Y, Dojat M, Scherrer B, Forbes F, Garbay C, Multimodal MRI segmentation of ischemic stroke lesions, Conf Proc IEEE Eng Med Biol Soc., Lyon, 2007, PMID18002276, PMC2735153

(EN, Draft version)

2006

Scherrer B, Dojat M, Forbes F, Garbay C, Une Approche SMA pour la Segmentation Markovienne des Tissus et Structures Présents dans les IRM Cérébrales, 2006

(FR, Draft version)

Scherrer B, Dojat M, Forbes F, Garbay C, Segmentation Markovienne Distribuée et Coopérative des Tissus et Structures Présents dans des IRM Cérébrales, RFIA, Tour, 2006

(FR, Draft version)

Abstracts

2018

Scherrer B, Kapur K, Prohl A, Peters J, Tomas-Fernandez X, Krueger D, Sahin M, Warfield SK, The connectivity fingerprint of the fusiform gyrus predicts the Autism Observation Scale for Infants (AOSI) in Tuberous Sclerosis Complex, Proc. the 26th International Symposium on Magnetic Resonance in Medicine (ISMRM), Paris, France, 2018

Reymbaut A, Scherrer B, Gilbert G, Szczepankiewicz F, Nilsson M, Descoteaux M, The Magic DIAMOND method: probing brain microstructure by combining b-tensor encoding and advanced diffusion compartment imaging, Proc. the 26th International Symposium on Magnetic Resonance in Medicine (ISMRM), Paris, France, 2018

Rensonnet G, Scherrer B, Girard G, Rafael-Patino J, Warfield SK, Macq B, Thiran J, Taquet M, Estimation of the brain microstructure in the presence of crossing fascicles from a dictionary of Monte Carlo signals, Proc. the 26th International Symposium on Magnetic Resonance in Medicine (ISMRM), Paris, France, 2018

Mirzaalian H, Scherrer B, Afacan O, Gholipour A, Warfield SK, High Resolution Reconstruction of Diffusion Weighted Imaging Using EPI-Corrected Snapshots Acquired with Rotated K-spaces, Proc. the 26th International Symposium on Magnetic Resonance in Medicine (ISMRM), Paris, France, 2018

2017

Scherrer B, Qiu J, Hashim J, Afacan O, Wu Y, Marcotrigiano M, Warfield SK, Mannix R, Diffusion compartment imaging reveals microstructural injuries in a mouse model of mild traumatic brain injury, Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM), Hawaii, USA, 2017

Scherrer B, Taquet M, St-Onge E, Rensonnet G, Warfield SK, A novel diffusion compartment imaging (DCI) model that captures the asymmetry of WM microstructure heterogeneity, Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM), Hawaii, USA, 2017

Rensonnet G, Scherrer B, Warfield SK, Macq B, Taquet M, Microstructure imaging from a dictionary of Monte Carlo signals: assessment on a rat spinal cord model of Wallerian degeneration, Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM), Hawaii, USA, 2017

Afacan O, Gholipour A, Scherrer B, Warfield SK, Evaluation of convex programming for super-resolution MRI reconstruction using shifted slice acquisitions, Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM), Hawaii, USA, 2017

St-Onge E, Scherrer B, Taquet M, Warfield SK, Multi-Tensor Filtering based on Expectation-Maximization Framework, Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM), Hawaii, USA, 2017

Mirzaalian H, Scherrer B, Afacan O, Gholipour A, Warfield SK, Performance assessment of EPI-distortion correction of brain images; which plane and phase encoding direction should be chosen?, Proc. the 25th International Symposium on Magnetic Resonance in Medicine (ISMRM), Hawaii, USA, 2017

2016

Scherrer B, Jacobs D, Taquet M, Des Rieux A, Macq B, Prabhu SP, Warfield SK, Measurement of restricted and hindered anisotropic diffusion tissue compartments in a rat model of Wallerian degeneration, Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM), Singapore, 2016

Chamberland M, Scherrer B, Prabhu SP, Madsen J, Fortin D, Whittingstall K, Descoteaux M, Warfield SK, Magnetic ROIs enable improved tractography accuracy through oriented prior, Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM), Singapore, 2016

Scherrer B, Majeed A, Afacan O, Singh JM, Warfield SK, Sanders SP, Right Ventricular Myofiber Architecture, Proc. the 24th International Symposium on Magnetic Resonance in Medicine (ISMRM), Singapore, 2016

2015

Scherrer B, Gholipour A, Afacan O, Prabhu SP, Warfield SK, Accelerated Motion-Robust Non-Cartesian Multi-Shot Diffusion-Weighted Imaging with Reconstruction in the Image Space, Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015

Tomas-Fernandez X, Scherrer B, Wan C, Warfield SK, Arcuate Fasciculus Delineation by Means of Diffusion Compartment Imaging Based Tractography, Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015

Jacobs D, Scherrer B, Jankovski A, des Rieux A, Taquet M, Gallez B, Warfield SK, Macq B, Characterization of the Wallerian Degeneration Process in the Rat Spinal Cord with DIAMOND and NODDI: Comparison with Histological Obervations, Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015

ISMRM Summa Cum Laude Merit Award for Damien Jacobs, first author

Jacobs D, Scherrer B, Jankovski A, des Rieux A, Taquet M, Gallez B, Warfield SK, Macq B, Longitudinal Characterization of the Wallerian Degeneration Process by a Multi-Compartment Diffusion Model: DIAMOND After a Rhizotomy in the Rat Spinal Cord and Comparison with the Histology, Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015

ISMRM Summa Cum Laude Merit Award for Damien Jacobs, first author

Stamm A, Afacan O, Scherrer B, Singh JM, Warfield SK, In-Vivo High Resolution Imaging of Fine-Scale Anatomical Structures at 3T with Simultaneous Bias/Variance Reduction, Proc. the 23th International Symposium on Magnetic Resonance in Medicine (ISMRM), Toronto, Canada, 2015

2014

Scherrer B, Taquet M, Sahin M, Prabhu SP, Warfield SK, A novel biophysical model that characterizes the distribution of anisotropic micro-structural environments with DWI, Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM), Milan, Italy, 2014

Scherrer B, Gholipour A, Sahin M, Prabhu SP, Warfield SK, Super-resolution multi-fascicle imaging reveals the presence of both radial and tangential diffusion in the mature cortex using a clinical scanner, Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM), Milan, Italy, 2014

Scherrer B, Taquet M, Sahin M, Prabhu SP, Warfield SK, Quantitative evaluation of biophysical models of the diffusion with in vivo data by assessment of the generalization error, Proc. the 22th International Symposium on Magnetic Resonance in Medicine (ISMRM), Milan, Italy, 2014

2013

Scherrer B, Schwartzman A, Taquet M, Prabhu SP, Sahin M, Warfield SK, DIAMOND: a novel biophysical diffusion model that characterizes the distribution of anisotropic micro-structural environments with DWI, ISMRM Workshop 'Diffusion as a Probe of Neural Tissue Microstructure', Podstrana, Croatia, 2013

Scherrer B, Warfield SK, Accurate estimation of a multiple fascicle model is enabled by manipulation of gradient strength in a two-shell HARDI to achieve low TE, Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM), Salt Lake City, USA, 2013

Scherrer B, Taquet M, Afacan O, Warfield SK, Does the signal arising from a single fascicle significantly deviates from a monoexponential decay with a clinical scanner?, Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM), Salt Lake City, USA, 2013

Taquet M, Scherrer B, Macq B, Warfield SK, Multi-Fascicle Model Reconstruction from Acquisitions of DWI at a Single B-Value with a Population-Informed Prior, Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM), Salt Lake City, USA, 2013

Afacan O, Gholipour A, Scherrer B, Warfield SK, Motion Detection for Diffusion Weighted MRI Using EPI Phase Correction Lines, Proc. the 21th International Symposium on Magnetic Resonance in Medicine (ISMRM), Salt Lake City, USA, 2013

2012

ISMRM Magna Cum Laude Merit Award

Akhondi-Asl A, Hans A, Scherrer B, Peters JM, Warfield SK, Whole brain connectivity analysis using resting state functional MRI in pediatric TSC patients, Proc. the 20th International Symposium on Magnetic Resonance in Medicine (ISMRM), Melbourne, Australia, 2012

2011

Scherrer B, Warfield SK, Characterizing Complex White Matter Structure from Cube and Sphere Diffusion Imaging with a Multi-Fiber Model (CUSP-MFM), Proc. the 19th International Symposium on Magnetic Resonance in Medicine (ISMRM), Montreal, Canada, 2011

(EN, Draft version)

Trainee Abstract Award
(EN, Draft version)

Hammond D, Scherrer B, EEG Source Estimation via Cortical Graph Smoothing, INCF NeuroInformatics, Boston, USA, 2011

2010

Scherrer B, Warfield SK, Optimal HARDI acquisition schemes for multi-tensor models, Proc. the 18th International Symposium on Magnetic Resonance in Medicine (ISMRM), Stockholm, Sweden, 2010

(EN, Draft version)

2006

Scherrer B, Dojat M, Forbes F, Garbay C, Distributed and Cooperative Markovian Segmentation of Tissues and Structures in MRI Brain Scans, Human Brain Mapping, Florence, Italie, 2006

(EN, Draft version)

LANGUAGE

French (native), English

TECHNICAL SKILLS

Applied Mathematics & Signal Processing

Statistics, Markov random fields, Optimisation, Filtering, Fourier analysis, Wavelet analysis, deformable models, Neural Networks (Perceptron, MLP, RBF, Self Organizing Map, Support Vector Machines, ...), Fuzzy logic, Riemannian and Log-Euclidian metrics.

Meshing & Surfaces

Differential geometry, Delaunay Triangulation, Voronoi Diagrams, Medial axes, Marching Cube, ...

Digital Electronic

Processor architecture (RISC, CISC, FPGA), Conception & programming of microcontroller based board.

Language

C/C++, Matlab, Java, Fortran, Prolog, VHDL, Assembly language (Microchip PIC, Atmel AVR, Intel X86, Motorola 68000, SGS-Thomson ST62XX), PHP, Javascript.

Development Software & Toolkits

Microsoft Visual Studio, KDevelop, Matlab, SciLab, QT, VTK/ITK, OpenGL, FSL, SPM.

Operating Systems

UNIX, Linux, Windows XP, Realtime OS (μOS-II, VxWorks).

(PERSONNAL) SOFTWARE DEVELOPEMENT & PROJECTS

Viewer/Editor for MRI Brain Scan

Complete viewer/editor programmed in C++ with QT and VTK.

[MORE DETAILS]

File Manager for TI-89 and TI-92 calculators

(100% Assembly Language, more than 18000 lines of code)

[MORE DETAILS]

Digital Electronic

Timer with 128x64 graphical screen, IR receiver for computer, Monitoring Station with color screen for my camper van..

Furnishing of a camper van

Converting a commercial vehicle into a real camper van: isolation, additional 12V battery, 230V converter, kitchen, bed, ...

[MORE DETAILS]

REFERENCES

Simon K. Warfield	CRL – Computational Radiology Laboratory CHB, Harvard Medical School	Simon pt Warfield at childrens.harvard.edu
Catherine GARBAY	LIG – Grenoble Informatics Laboratory MAGMA Team	Catherine pt Garbay at imag.fr
Michel DOJAT	GIN - Grenoble - Institute of Neuroscience Functional and Metabolic Neuroimaging	Michel pt Dojat at ujf-grenoble.fr
Florence FORBES	INRIA Rhône-Alpes MISTIS Team	Florence pt Forbes at inrialpes.fr
Christophe Segebarth	GIN - Grenoble - Institute of Neuroscience Functional and Metabolic Neuroimaging	Christophe pt Segebarth at ujf-grenoble.fr

Advisors:	Catherine Garbay, LIG, MAGMA Team
	Michel Dojat, INSERM U836, Functional and Metabolic Neuroimaging Team
Active Collaboration:	Florence Forbes, INRIA Grenoble, MISTIS Team